miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|223663452|gb|GO080349.1|GO080349 GTTTTTTTTTTTTTTTTTTTTACTCCCTCTTCTTTTATTTACATGGCCAAAACATTGAAGAACATTTATGTAAAATCAGA
AGTAAAAACATCAGCCTATACCAGAATATACAATAACAATGAATATCTACACATGGAATGAGCAATGGCATTCAGAGAAG
AGCTTCATATTCTTCCTTAGAAAAAAGTTTACTTCTTGCAAAAACTCCATTTCGCAGTGGAGGCAAAACAATTGCTAAGT
AACCCTCTGCATTGGGCTTCTGCATCAGCAATTGGGGAGTTGAAATGAGGCGTTCATTAACCTCAACCAGTTTACCATTT
ACCCCTGCTAGGACAGTGTACTGAGAACTATCAGAGCATGTGATAATGCATAGTGGTGACCTCAGACCCATTTGTTGGGC
ACCTCGTTTACCCTTTCCTGACACCTGGTTGTTTAAGCGATTGAATTTGCCCACATCAAAATTAATGTCTGTAATCTCCT
TCTTCTCTGCTAAGACAGGGTGCCGGTGAGAAAGAGTTAGTAGACACAACTTGTTGGTATGAACCATGACACATGTATGT
CCAGTTTTATCTGGTGATGGTAAACTTTCTTTTTCTTCCTCAAAAGTATCAGAATTCTCTTTATCTGCTGGAGTAGCTTC
TTCCATGGTGTCTTGTGAATTAATATTTTCTGTACAGTTTTTCCCATTTTCAGACTTTTCATACCCACTGGCTGAGTTTG
ACTTGCTCAAGTCATCTGGTATAAAATAGTAGT




Most similar to sp|Q5ZHW7|CI006_CHICK

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5ZHW7|CI006_CHICK UPF0436 protein C9orf6 homolog OS=Gallus
           gallus GN=RCJMB04_32i4 PE=2 SV=1
          Length = 173

 Score =  126 bits (317), Expect = 1e-28
 Identities = 59/134 (44%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
 Frame = -3

Query: 553 CVMVHTNKLCLLTLSHRHPVLAEKKEITDINFDVG-KFNRLNNQVSGKGKRGAQQMGLRS 377
           CV+ H+N++C++TL+  HP+L   K IT IN+ +    +RL N+VSGK KRGAQ +   +
Sbjct: 30  CVLQHSNRICVITLAEAHPLLQPGKTITSINYQISPNCSRLQNKVSGKSKRGAQFLTELA 89

Query: 376 PLCIITCSDSSQYTVLAGVNGKLVEVNERLISTPQLLMQKPNAEGYLAIVLPPLRNGVFA 197
           PLC I  SD  +YT+ + + G+L+EVNE ++S P LL +KP+ EGY+A+VLP        
Sbjct: 90  PLCRIASSDGEEYTIYSFIRGRLIEVNENILSNPALLQEKPSTEGYIAVVLPKFEESKSV 149

Query: 196 RSKLFSKEEYEALL 155
              L + EEY+ +L
Sbjct: 150 TQGLLTPEEYKEVL 163